Google Scholar: H-Index [ 13 ] (720 citations as of May, 2021)

Preprints

Z. Yang, G. Xu, Q. Zhang, T. Obata, J. Yang, Genome-wide mediation analysis: bridging the divide between genotype and phenotype via transcriptomic data in maize, bioRxiv, 2021.
10.1101/2021.04.09.439238

C. Miao, A. Guo, J. Yang, Y. Ge, J. C. Schnable, Automation of Leaf Counting in Maize and Sorghum Using Deep Learninge, bioRxiv, 2020.
10.1101/2020.12.19.423626

J. Li, D. Cheng, S. Guo, Z. Yang, M. Chen, C. Chen, Y. Jiao, W. Li, C. Liu, Y. Zhong, X. Qi, J. Yang, S. Chen, Genomic selection to optimize doubled haploid-based hybrid breeding in maize, bioRxiv, 2020.
10.1101/2020.09.08.287672

C. Miao, T. P. Hoban, A. Pages, Z. Xu, E. Rodene, J. Ubbens, I. Stavness, J. Yang, and J. C. Schnable, Simulated plant images improve maize leaf counting accuracy, bioRxiv, 2019.
10.1101/706994

2021

S. Deng, G. Xu, D. Caddell, L. Dahlen, L. Washington, J. Yang, D. Coleman-Derr, Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome, in press, 2021.
| Preprint |

M. A. Meier, M. G. Lopez-Guerrero, M. Guo, M. R. Schmer, J. R. Herr, J. C. Schnable, J. R. Alfano, J. Yang, Rhizosphere Microbiomes in a Historical Maize/Soybean Rotation System respond to Host Species and Nitrogen Fertilization at Genus and Sub-genus Levels, Applied and Environmental Microbiology, 2021.
10.1128/AEM.03132-20 | Preprint | GitHub

2020

G. Xu, J. Lyu, Q. Li, H. Liu, D. Wang, M. Zhang, N. M. Springer, J. Ross-Ibarra, J. Yang, Evolutionary and functional genomics of DNA methylation in maize domestication and improvement, Nature Communications, 2020.
s41467-020-19333-4 | Preprint | Github

C. Miao, A. Pages, Z. Xu, E. Rodene, J. Yang, and J. C. Schnable, Semantic segmentation of sorghum using hyperspectral data identifies genetic associations, Plant Phenomics, 2020.
10.34133/2020/4216373 | cited 15

2019

Y. Ge, A. Atefi, H. Zhang, C. Miao, R. K. Ramamurthy, B. Sigmon, J. Yang, J. C. Schnable, High-throughput analysis of leaf physiological and chemical traits with VIS-NIR-SWIR spectroscopy: A case study with a maize diversity panel, Plant Methods, 2019.
10.1186/s13007-019-0450-8 | cited 28

H. Liu, Q. Wang, M. Chen, Y. Ding, X. Yang, J. Liu, X. Li, C. Zhou, Q. Tian, Y. Lu, D. Fan, J. Shi, L. Zhang, C. Kang, M. Sun, F. Li, Y. Wu, Y. Zhang, B. Liu, X.Y. Zhao, Q. Feng, J. Yang, B. Han, J. Lai, X.S. Zhang, X. Huang, Genome-wide identification and analysis of heterotic loci in three maize hybrids, Plant Biotechnology Journal, 2019.
10.1111/pbi.13186 | cited 8

C. Miao, J. Yang, J. C. Schnable, Optimizing the identification of causal variants across varying genetic architectures in crops, Plant Biotechnology Journal, 2019.
10.1111/pbi.13023 | preprint | cited 16

2018

R. Shao, H. Zheng, J. Yang, S. Jia, T. Liu, Y. Wang, J. Guo, Q. Yang, G. Kang, Proteomics Analysis Reveals That Nitric Oxide Regulates Photosynthesis of Maize Seedlings under Water Deficiency, Nitric Oxide, 2018.
10.1016/j.niox.2018.09.004 | cited 3

J. Yang, C. E. Yeh, R. K. Ramamurthy, X. Qi, R. L. Fernando, J. C.M. DekkersD. J. Garrick, D. Nettleton and P. S. Schnable, Empirical Comparisons of Different Statistical Models to Identify and Validate Kernel Row Number-Associated Variants from Structured Multiparent Mapping Populations of Maize, G3: Genes Genomes Genetics, 2018.
10.1534/g3.118.200636 | Github | Figshare| cited 10

Z. Liang, S. K. Gupta, C. T. Yeh, Y. Zhang, D. W. Ngu, R. Kumar, H. T. Patil, K. D. Mungra, D. V. Yadav, A. Rathore, R. K. Srivastava, R. Gupkta, J. Yang, R. K. Varshney, P. S. Schnable, J. C. Schnable, Phenotypic data from inbred parents can improve genomic prediction in pearl millet hybrids, G3: Genes Genomes Genetics, 2018.
10.1534/g3.118.200242 | cited 17

C. Miao, J. Fang, D. Li, P. Liang, X. Zhang, J. Yang, J. C. Schnable, H. Tang, Genotype-Corrector: improved genotype calls for genetic mapping in F2 and RIL populations, Scientific Reports, 2018.
10.1038/s41598-018-28294-0 | Github | cited 11

M. Bezrutczyk, T. Hartwig, M. Horschman, S. N. Char, J. Yang, B. Yang, D. Sosso, W. Frommer, Impaired phloem loading in genome-edited triple knock-out mutants of SWEET13 sucrose transporters, New Phytologist, 2018.
10.1111/nph.15021 | preprint | cited 40

P. Bilinski, P. S. Albert, J. J. Berg, J. A. Birchler, M. N. Grote, A. Lorant, J. Quezada, K. Swarts, J. Yang, J. Ross-Ibarra, Parallel altitudinal clines reveal adaptive evolution of genome size in Zea mays, PLOS Genetics, 2018.
10.1371/journal.pgen.1007162 | preprint | Github | cited 58

2017

H.-Y. Lin, Q. Liu, X. Li, J. Yang, S. Liu, Y. Huang, M. J. Scanlon, D. Nettleton, P. S. Schnable, Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS, Genome Biology, 2017.
10.1186/s13059-017-1328-6 | cited 32

J. Yang, S. Mezmouk, A. Baumgarten, E. S. Buckler, K. E. Guill, M. D. McMullen, R. H. Mumm, J. Ross-Ibarra, Incomplete dominance of deleterious alleles contribute substantially to trait variation and heterosis in maize, PLOS Genetics, 2017.
10.1371/journal.pgen.1007019 | Preprint | Github | cited 68

Z. Dong, W. Li, E. Unger-Wallace, J. Yang, E. Vollbrecht, G. S. Chuck., Ideal crop plant architecture is mediated by tassels replace upper ears1, a BTB/POZ ankyrin repeat gene 5 targeted by TEOSINTE BRANCHED1, PNAS, 2017.
10.1073/pnas.1714960114 | cited 48

J. Hao, J. Yang, J. Dong, S-Z. Fei, Characterization of BdCBF genes and Genome-wide Transcriptome Profiling of BdCBF3-dependent and -independent Cold Stress Responses in Brachypodium Distachyon, Plant Science, 2017.
10.1016/j.plantsci.2017.06.001 | cited 8

2015

J. Yang, H. Jiang, C. T. Yeh, J. Yu, J. A. Jeddeloh, D. Nettleton, and P. S. Schnable, Extreme-phenotype genome-wide association study (XP-GWAS): A method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel, The Plant Journal, 2015.
10.1111/tpj.13029 | cited 63

D. Sosso, D. Luo, Q. Li, J. Sasse, J. Yang, G. Gendrot, M. Suzuki, K. E. Koch, D. R. McCarty, P. S. Chourey, P. M. Rogowsky, J. Ross-Ibarra, B. Yang, and W. B. Frommer, Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport, Nature Genetics, 2015.
10.1038/ng.3422 | cited 189

S. Leiboff, X. Li, H.-C. Hu, N. Todt, J. Yang, X. Li, X. Yu, G. J. Muehlbauer, M. C. P. Timmermans, J. Yu, P. S. Schnable, and M. J. Scanlon, Genetic control of morphometric diversity in the maize shoot apical meristem, Nature Communications, 2015.
10.1038/ncomms9974 | cited 52

2014 and Before

S. Liu, K. Ying, C.-T. Yeh, J. Yang, R. Swanson-Wagner, W. Wu, T. Richmond, D. J. Gerhardt, J. Lai, N. Springer, D. Nettleton, J. A. Jeddeloh, and P. S. Schnable, Changes in genome content generated via segregation of non-allelic homolog, The Plant Journal, 2012.
10.1111/j.1365-313X.2012.05087.x | cited 26

L. Koesterke, D. Stanzione, M. Vaughn, S. M. Welch, W. Kusnierczyk, J. Yang, C.-T. Yeh, D. Nettleton, and P. S. Schnable, An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies, 2011 IEEE Int. Symp. Parallel Distrib. Process. Work. Phd Forum, pp. 523–530, May 2011.
10.1111/j.1365-313X.2012.05087.x | cited 10


Patent Applications

P. S. Schnable, A. OTT, J. Yang, Intercrossed ex-PVP lines. 2014. PENDING.

P. S. Schnable, J. Yang, Identification of QTLs and trait-associated SNPs controlling six yield component traits in maize. 2013. PENDING.

P. S. Schnable, J. Yang, R. A. Swanson-Wagner, D. Nettleton, QTL regulating ear productivity traits in maize. U.S. Patent No. 8779233. Filed July 12, 2011.